usefragsph not on There are 46 ligand heavy atoms Ligand center of coords (x y z): 30.3749130434783 1.96345652173913 34.6761521739131 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2087 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 866 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 863 Number of spheres polar: 284, nonpolar: 377, out of current total: 863 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.68637 40.31570 -7.99625 11.92677 24.68604 44.65761 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 513 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 444 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 435 Spheres center of coords (x y z): 32.8264222068965 1.77483036781609 35.5619876091954 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.22757073023632 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 46