usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 75.07005 34.3 19.99195 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1512 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 821 WARNING: removing a crystallographic sphere that is distance 1.0603324950222 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 812 Number of spheres polar: 350, nonpolar: 234, out of current total: 812 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 65.09082 83.19092 24.32019 44.27618 10.00809 29.89316 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 314 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 250 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 246 Spheres center of coords (x y z): 72.7741782926829 35.3690128048781 17.4806060162601 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.91408283955712 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 19