usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 75.07005 34.3 19.99195 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1512 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 821 WARNING: removing a crystallographic sphere that is distance 1.0603324950222 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 812 Number of spheres polar: 350, nonpolar: 234, out of current total: 812 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 65.09082 83.19092 24.32019 44.27618 10.00809 29.89316 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 477 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 408 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 402 Spheres center of coords (x y z): 73.0122624626866 35.3401118905473 17.7348879353234 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.71204936926685 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 19