usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 75.9246666666667 34.63275 18.88775 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1662 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 914 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 913 Number of spheres polar: 325, nonpolar: 316, out of current total: 913 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 65.97209 85.27022 24.77415 44.60564 8.96819 28.80184 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 537 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 460 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 441 Spheres center of coords (x y z): 73.4569518594105 35.5106603174603 17.1279887755102 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.54706074792499 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 24