usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 74.6675833333333 35.8203055555555 20.1798055555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1887 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 900 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 899 Number of spheres polar: 240, nonpolar: 332, out of current total: 899 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 64.67683 84.64594 25.87050 45.81954 10.18116 30.10420 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 534 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 481 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 465 Spheres center of coords (x y z): 73.8883274838709 36.7588873763441 17.4120162150537 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.81428007781434 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 36