usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): -20.3247 40.1427 93.5387 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1363 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 844 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 844 Number of spheres polar: 283, nonpolar: 307, out of current total: 844 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -30.28856 -10.46843 30.20947 50.05468 83.54602 103.44633 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 487 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 422 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 413 Spheres center of coords (x y z): -18.587017433414 42.0550113559322 95.8625108232445 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.86455233385355 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 10