usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 23.4553636363636 12.2776590909091 23.1852045454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1842 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 897 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 896 Number of spheres polar: 281, nonpolar: 397, out of current total: 896 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.45801 33.40748 2.56014 22.25472 13.38954 33.11229 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 508 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 432 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 425 Spheres center of coords (x y z): 23.4018583294117 14.7522655529412 23.4678773882353 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.98465730160274 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 44