usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 30.159375 5.946875 10.321525
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1785
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 903
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 899
Number of spheres polar: 294, nonpolar: 327, out of current total: 899
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.20841 40.08363 -0.33414 15.92974 0.34476 20.28411
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 353
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 287
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 269
Spheres center of coords (x y z): 29.8948126394052 8.43737657992565 9.80523728624534
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.45628806324012
Final number of output spheres is: 45
Number of polar spheres: 12
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 40