usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 30.2662727272727 5.86539393939394 15.3234242424242 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2457 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1087 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1085 Number of spheres polar: 330, nonpolar: 496, out of current total: 1085 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.27013 38.36090 -4.13259 15.82232 5.35309 25.22624 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 370 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 308 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 306 Spheres center of coords (x y z): 26.7338783333333 6.80216375816993 14.1569126470588 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.50867361057493 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 33