usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): -61.6911818181818 -39.5213636363636 38.8544545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1192 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 825 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 825 Number of spheres polar: 289, nonpolar: 360, out of current total: 825 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -71.01539 -51.77021 -49.51996 -31.11693 28.94185 48.84600 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 223 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 217 Spheres center of coords (x y z): -59.3873108755761 -41.6044473732719 40.1896479262673 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.47656628023165 Final number of output spheres is: 45 Number of polar spheres: 27 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 11