usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 13.49559375 -7.675625 16.53271875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1525 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 752 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 745 Number of spheres polar: 258, nonpolar: 218, out of current total: 745 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.51690 23.48660 -17.61109 2.27500 9.58310 26.50543 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 472 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 406 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 375 Spheres center of coords (x y z): 14.9530960266667 -6.72425970666667 19.38126472 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.63234254363378 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 32