usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 11.7621621621622 -2.27216216216216 49.5712162162162 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2136 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1000 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1000 Number of spheres polar: 403, nonpolar: 373, out of current total: 1000 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.77144 21.74347 -12.26200 7.69860 39.93800 59.53465 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 264 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 260 Spheres center of coords (x y z): 11.9210936153846 -1.15123176923077 51.6662546923077 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.96329917676405 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 37