usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 29.6388536585366 6.12490243902439 15.1383414634146
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2277
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1061
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1060
Number of spheres polar: 352, nonpolar: 416, out of current total: 1060
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.69475 36.95964 -3.74270 16.08700 5.15005 25.05825
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 599
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 529
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 528
Spheres center of coords (x y z): 26.3943210416667 6.72475505681818 13.7128700378788
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.96869547258193
Final number of output spheres is: 60
Number of polar spheres: 27
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 41