usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 24.0475882352941 10.7458823529412 21.6420588235294 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1599 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 838 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 835 Number of spheres polar: 267, nonpolar: 341, out of current total: 835 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.06286 33.99211 3.88359 20.73159 11.67567 31.27545 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 286 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 239 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 223 Spheres center of coords (x y z): 23.2031378923767 14.2534556502242 23.7084516143498 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.9922565891649 Final number of output spheres is: 45 Number of polar spheres: 22 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 17