usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 22.0464375 11.851 22.0278125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1619 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1002 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 999 Number of spheres polar: 355, nonpolar: 389, out of current total: 999 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.07490 31.83673 1.87443 21.79344 12.19675 31.97408 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 337 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 272 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 250 Spheres center of coords (x y z): 22.06335724 14.02194984 23.56533344 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.07853655667895 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 16