usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 24.8600833333333 10.8120416666667 22.0219166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1428 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 740 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 736 Number of spheres polar: 264, nonpolar: 212, out of current total: 736 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.90693 34.84355 2.08340 20.81192 12.08880 32.00514 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 227 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 204 Spheres center of coords (x y z): 22.8192235294118 14.3064063235294 22.8719095098039 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.35465589119401 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 24