usefragsph not on
There are 52 ligand heavy atoms
Ligand center of coords (x y z): 40.5694230769231 14.3855961538462 43.6864615384615
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1216
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 632
WARNING: removing a crystallographic sphere that is distance 7.55597445734169 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 7.73570300619149 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 624
Number of spheres polar: 224, nonpolar: 202, out of current total: 624
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.59983 50.47360 4.41184 23.97252 33.77347 53.46420
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 261
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 216
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 50
Spheres center of coords (x y z): 40.5751 14.42538 43.29164
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.24335849068109
WARNING: removing a crystallographic sphere since 50>45 max spheres are present
WARNING: removing a crystallographic sphere since 49>45 max spheres are present
WARNING: removing a crystallographic sphere since 48>45 max spheres are present
WARNING: removing a crystallographic sphere since 47>45 max spheres are present
WARNING: removing a crystallographic sphere since 46>45 max spheres are present
Final number of output spheres is: 45
Number of polar spheres: 17
Number of nonpolar spheres: 14
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 45