usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 13.2441515151515 -7.76721212121212 16.6760606060606 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1594 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 730 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 717 Number of spheres polar: 241, nonpolar: 234, out of current total: 717 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.34520 23.19246 -17.69986 2.22769 7.74500 26.66940 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 292 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 240 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 212 Spheres center of coords (x y z): 14.7535677358491 -6.43188584905661 19.4230497169811 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.61855891729827 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 33