usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): 23.9105238095238 12.3190238095238 23.0945 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1768 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 946 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 944 Number of spheres polar: 318, nonpolar: 453, out of current total: 944 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.94389 33.84918 3.69320 22.29515 13.22091 32.92474 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 519 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 445 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 384 Spheres center of coords (x y z): 23.2256928125 14.3170317447917 24.347373515625 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.41127017030956 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 42