usefragsph not on There are 39 ligand heavy atoms Ligand center of coords (x y z): 22.8160256410256 12.1882051282051 22.6011794871795 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1756 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 891 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 891 Number of spheres polar: 263, nonpolar: 298, out of current total: 891 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.84190 32.78351 2.21000 22.18351 12.79017 32.54292 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 543 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 475 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 456 Spheres center of coords (x y z): 22.4321601754386 14.8964725219298 23.5339285307018 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.46990397520006 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 39