usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 12.63525 -6.54407142857143 16.336
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1515
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 825
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 825
Number of spheres polar: 318, nonpolar: 280, out of current total: 825
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.65669 22.57908 -15.66120 3.45508 9.19224 26.25746
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 313
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 263
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 250
Spheres center of coords (x y z): 13.51509648 -5.21025776 19.53517408
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.44525019550971
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 28