usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 23.3033777777778 12.8371333333333 23.323 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1522 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 831 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 825 Number of spheres polar: 279, nonpolar: 296, out of current total: 825 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.42339 33.29791 2.92359 22.77393 13.45760 33.22477 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 320 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 270 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 244 Spheres center of coords (x y z): 22.614738852459 14.6143997131148 23.7410661065574 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.71158909778582 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 45