usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 23.3098863636364 12.2285454545455 23.1008181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1844 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 956 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 955 Number of spheres polar: 337, nonpolar: 403, out of current total: 955 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.32011 33.28957 2.24400 22.18892 13.17461 33.07772 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 536 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 460 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 453 Spheres center of coords (x y z): 22.6896570198676 14.7465734878587 23.4789625165563 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.2364863828588 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 44