usefragsph not on There are 48 ligand heavy atoms Ligand center of coords (x y z): 23.0865416666667 12.1846458333333 22.9942916666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1658 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 790 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 788 Number of spheres polar: 271, nonpolar: 318, out of current total: 788 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.14612 33.07398 2.24956 22.09944 12.99959 32.98178 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 297 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 244 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 48 Spheres center of coords (x y z): 23.0865416666667 12.1846458333333 22.9942916666667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.2507695598918 WARNING: removing a crystallographic sphere since 48>45 max spheres are present WARNING: removing a crystallographic sphere since 47>45 max spheres are present WARNING: removing a crystallographic sphere since 46>45 max spheres are present Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 45