usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): -17.8094666666667 -91.7858666666667 12.8297333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1178 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 652 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 652 Number of spheres polar: 195, nonpolar: 219, out of current total: 652 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -27.75586 -7.82941 -99.93771 -82.34498 3.18719 22.79818 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 265 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 222 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): -17.4529488425926 -93.6396341666667 15.0555708796296 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.38108812779798 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 15