usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 17.46732 -39.81872 8.7086
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1278
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 685
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 680
Number of spheres polar: 212, nonpolar: 199, out of current total: 680
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.97468 27.37557 -49.79271 -32.84017 -1.28491 18.70063
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 435
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 381
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 354
Spheres center of coords (x y z): 16.4618394067797 -41.7418707062147 10.4633694067797
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.13065806402347
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 29
Final number of spheres that are from crystallographic ligand: 25