Distance from surface specified: 1.80 There are 28 ligand heavy atoms Ligand center of coords (x y z): 24.3466785714286 12.437 22.659 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12009 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10225 WARNING: removing a crystallographic sphere that is distance 1.83679421819647 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 9782 Number of spheres polar: 6459, nonpolar: 2340, out of current total: 9782 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.36360 38.34600 -1.48000 26.43200 8.66320 36.64520 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1319 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 705 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 684 Spheres center of coords (x y z): 23.0697643274854 16.9888157894737 20.6706850877193 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.7383416715711 Final number of output spheres is: 200 Number of polar spheres: 126 Number of nonpolar spheres: 60 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 27