usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 75.15334375 44.83259375 65.02575 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2105 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1001 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1001 Number of spheres polar: 304, nonpolar: 566, out of current total: 1001 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 65.15411 85.13715 34.86140 54.81321 55.04288 74.53757 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 495 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 405 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 367 Spheres center of coords (x y z): 73.1009944686648 47.5747871934604 65.2606120435968 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.93053124456861 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 32