usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): -1.97590322580645 50.1936451612903 20.1521935483871 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1521 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 839 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 839 Number of spheres polar: 257, nonpolar: 416, out of current total: 839 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.97241 7.40657 40.44500 60.15189 10.17574 30.11599 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 214 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 189 Spheres center of coords (x y z): -2.89115566137566 47.6305216402116 23.3662841798942 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87748770198982 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 31