There are 28 ligand heavy atoms Ligand center of coords (x y z): 83.3506428571428 6.82096428571429 -7.45221428571428 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12510 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 8289 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 8289 Number of spheres polar: 4811, nonpolar: 2729, out of current total: 8289 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 71.37240 95.33940 -5.17680 18.81940 -19.44560 4.44960 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 993 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 585 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 558 Spheres center of coords (x y z): 87.1143896057347 6.53394516129032 -9.90913620071685 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.68102453513583 Final number of output spheres is: 120 Number of polar spheres: 70 Number of nonpolar spheres: 48 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 28