usefragsph not on
There are 35 ligand heavy atoms
Ligand center of coords (x y z): 5.29408571428571 24.1341142857143 32.8214857142857
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1863
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 842
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 842
Number of spheres polar: 231, nonpolar: 506, out of current total: 842
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.67459 15.28274 14.15716 33.35739 23.07607 42.80428
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 275
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 236
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 214
Spheres center of coords (x y z): 2.89890271028037 22.6805308411215 34.1854834579439
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.09171135510409
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 35