usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 83.3827666666667 7.4143 -7.7574 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1294 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 732 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 732 Number of spheres polar: 185, nonpolar: 380, out of current total: 732 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 73.43725 93.26865 -2.57640 17.40400 -17.75604 1.89182 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 249 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 207 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 185 Spheres center of coords (x y z): 86.7450177837837 7.85324405405405 -7.8607092972973 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.73379770820342 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 30