usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 82.3423448275862 7.09924137931034 -7.37003448275862 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1570 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 734 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 734 Number of spheres polar: 215, nonpolar: 363, out of current total: 734 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 72.38652 92.33623 -2.87658 17.08229 -17.35756 2.44313 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 423 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 359 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 315 Spheres center of coords (x y z): 85.5246415238095 7.58564425396826 -7.55560819047618 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.07423082229357 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 29