usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 83.3506428571428 6.82096428571429 -7.45221428571428 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1188 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 701 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 697 Number of spheres polar: 186, nonpolar: 362, out of current total: 697 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 73.36457 93.33572 -3.08137 16.81532 -17.35453 1.06126 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 384 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 338 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 307 Spheres center of coords (x y z): 86.2685929315961 7.26507674267102 -7.24245358306189 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.43700534626482 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 28