There are 5 ligand heavy atoms Ligand center of coords (x y z): -5.4334 0.413 16.7344 useligsph not on Starting number of spheres from sph/sph cluster 0: 553 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 421 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 412 Number of spheres polar: 103, nonpolar: 231, out of current total: 412 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -16.68129 6.21030 -11.55949 11.22604 5.01310 28.34596 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 141 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 120 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): -5.4334 0.413 16.7344 Center point: 119 xyz: -5.33447 0.90911 16.36516 After continuity checking, number of spheres is: 81 Final number of output spheres is: 81 Number of polar spheres: 15 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 25 Final number of spheres that are from crystallographic ligand: 0