usefragsph not on
There are 5 ligand heavy atoms
Ligand center of coords (x y z): -5.4334 0.413 16.7344
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 553
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 372
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 367
Number of spheres polar: 88, nonpolar: 215, out of current total: 367
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.35287 4.54073 -9.16576 10.39400 6.85158 25.50861
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 185
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 159
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 138
Spheres center of coords (x y z): -3.6709531884058 4.58980724637681 13.363842826087
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.48543272062519
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 5