There are 8 ligand heavy atoms Ligand center of coords (x y z): -5.9115 1.38725 16.824 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 5378 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 4161 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 4161 Number of spheres polar: 1963, nonpolar: 1761, out of current total: 4161 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.74580 6.07300 -10.59480 13.37680 4.86680 28.76300 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 522 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 270 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 254 Spheres center of coords (x y z): -1.2936937007874 6.74417322834646 13.5959708661417 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.2556116073231 Final number of output spheres is: 120 Number of polar spheres: 49 Number of nonpolar spheres: 58 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 8