usefragsph not on
There are 21 ligand heavy atoms
Ligand center of coords (x y z): -3.857 5.19557142857143 14.8308095238095
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 697
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 497
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 496
Number of spheres polar: 72, nonpolar: 300, out of current total: 496
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.03171 5.93355 -4.69487 15.18480 4.87304 24.64369
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 278
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 251
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 209
Spheres center of coords (x y z): -4.58922004784689 5.49258033492823 11.9617406220096
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.38799505128543
Final number of output spheres is: 60
Number of polar spheres: 11
Number of nonpolar spheres: 40
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 21