usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -4.1835 4.81727272727273 14.7102272727273 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 711 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 522 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 521 Number of spheres polar: 135, nonpolar: 248, out of current total: 521 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.74500 5.79853 -4.48248 14.01030 5.12832 24.50672 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 304 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 251 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 200 Spheres center of coords (x y z): -4.6205442 6.00866185 12.3092134 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.04912236672614 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 22