usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -4.42527777777778 3.63461111111111 14.5627777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 709 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 499 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 495 Number of spheres polar: 119, nonpolar: 280, out of current total: 495 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.48941 5.56501 -5.67659 13.41401 4.62092 22.76579 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 171 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 146 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 112 Spheres center of coords (x y z): -4.30233982142857 5.94784535714285 12.3495438392857 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.20164820979449 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 18