usefragsph not on
There are 26 ligand heavy atoms
Ligand center of coords (x y z): -2.58434615384615 7.16 15.01
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 779
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 516
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 513
Number of spheres polar: 108, nonpolar: 276, out of current total: 513
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.00791 7.32945 -2.83070 16.96542 5.42930 24.94963
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 189
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 152
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 133
Spheres center of coords (x y z): -3.25555676691729 7.29589962406015 13.1153315789474
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.14754556079293
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 24
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 26