usefragsph not on
There are 5 ligand heavy atoms
Ligand center of coords (x y z): -5.0052 0.7618 16.5058
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 525
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 342
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 338
Number of spheres polar: 80, nonpolar: 186, out of current total: 338
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.47654 4.96292 -8.28856 10.65402 6.63716 23.97778
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 128
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 108
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 93
Spheres center of coords (x y z): -3.50954720430108 5.30360946236559 12.6722296774194
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.81598453672559
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 5