There are 6 ligand heavy atoms Ligand center of coords (x y z): 3.38383333333333 -0.223833333333333 7.7495 useligsph not on Starting number of spheres from sph/sph cluster 0: 831 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 758 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 757 Number of spheres polar: 216, nonpolar: 354, out of current total: 757 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.51807 14.91209 -12.18628 8.46868 -3.83280 18.46082 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 283 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 238 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 3.38383333333333 -0.223833333333333 7.7495 Center point: 132 xyz: 2.49105 0.04472 7.44463 After continuity checking, number of spheres is: 221 Spheres center of coords (x y z): 5.78097787330317 -1.7131028959276 8.32284420814479 Not crystallographic ligand, so keeping spheres closest to center of receptor, center of ligand, and center of spheres Receptor center of coords (x y z): -6.78470530654301 -2.24063730036064 13.1583936115404 Average weighted-distance for final elimination is: 31.7003792052817 Final number of output spheres is: 120 Number of polar spheres: 46 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 33 Final number of spheres that are from crystallographic ligand: 0