usefragsph not on
There are 6 ligand heavy atoms
Ligand center of coords (x y z): 3.38383333333333 -0.223833333333333 7.7495
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 831
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 683
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 683
Number of spheres polar: 190, nonpolar: 316, out of current total: 683
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.51807 13.35600 -10.21700 8.46868 -2.17507 16.27841
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 249
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 208
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 192
Spheres center of coords (x y z): 5.760364375 -0.711901927083333 7.88538270833334
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 8.69852592460563
Final number of output spheres is: 45
Number of polar spheres: 13
Number of nonpolar spheres: 22
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 6