There are 22 ligand heavy atoms Ligand center of coords (x y z): -3.4375 5.22695454545455 14.6176818181818 useligsph not on Starting number of spheres from sph/sph cluster 0: 755 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 500 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 493 Number of spheres polar: 116, nonpolar: 272, out of current total: 493 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.03521 8.55855 -6.47750 16.20575 4.77788 24.34110 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 153 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): -3.4375 5.22695454545455 14.6176818181818 Center point: 123 xyz: -3.37947 4.41327 14.15252 After continuity checking, number of spheres is: 119 Final number of output spheres is: 119 Number of polar spheres: 20 Number of nonpolar spheres: 59 Number of spheres that are near neither polar nor nonpolar receptor atoms: 40 Final number of spheres that are from crystallographic ligand: 0