usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): -3.47476 6.38804 14.4164
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 721
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 512
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 510
Number of spheres polar: 98, nonpolar: 302, out of current total: 510
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.97276 6.39633 -3.54629 16.07513 5.22200 24.39738
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 188
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 161
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 129
Spheres center of coords (x y z): -4.29276023255814 5.72998953488372 11.9624655813953
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.46710247811678
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 25