usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): -3.47476 6.38804 14.4164
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 721
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 512
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 510
Number of spheres polar: 98, nonpolar: 302, out of current total: 510
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.97276 6.39633 -3.54629 16.07513 5.22200 24.39738
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 294
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 258
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 213
Spheres center of coords (x y z): -4.23263441314554 5.34960741784038 12.187934600939
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.28589579779936
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 25