usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): -5.784625 0.98425 15.852625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 524 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 339 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 337 Number of spheres polar: 76, nonpolar: 184, out of current total: 337 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.83605 4.17645 -7.91332 10.94996 6.22553 24.20815 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 122 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 99 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 83 Spheres center of coords (x y z): -3.30792180722892 4.03502518072289 13.3541418072289 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.76777214719163 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 8