usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -3.60327272727273 4.70218181818182 14.772 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 759 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 479 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 469 Number of spheres polar: 105, nonpolar: 260, out of current total: 469 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.14924 5.96882 -4.88032 14.56269 5.07300 24.73705 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 171 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 143 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 126 Spheres center of coords (x y z): -3.27482182539683 5.24517936507936 11.9612342857143 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.90903810961373 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 22