usefragsph not on
There are 22 ligand heavy atoms
Ligand center of coords (x y z): -3.60327272727273 4.70218181818182 14.772
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 759
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 479
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 469
Number of spheres polar: 105, nonpolar: 260, out of current total: 469
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.14924 5.96882 -4.88032 14.56269 5.07300 24.73705
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 279
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 250
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 224
Spheres center of coords (x y z): -3.64172986607143 5.06295875 11.9797275446429
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.02811076447969
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 25
Number of spheres that are near neither polar nor nonpolar receptor atoms: 19
Final number of spheres that are from crystallographic ligand: 22